Sample	mapped_passed	duplicates_failed	secondary_passed	paired in sequencing_failed	duplicates_passed	read2_passed	read1_failed	read1_passed	with mate mapped to a different chr_passed	total_failed	properly paired_passed_pct	singletons_passed	supplementary_passed	singletons_passed_pct	mapped_failed_pct	mapped_passed_pct	supplementary_failed	with itself and mate mapped_failed	mapped_failed	total_passed	properly paired_failed	flagstat_total	with mate mapped to a different chr (mapQ >= 5)_passed	properly paired_failed_pct	with mate mapped to a different chr (mapQ >= 5)_failed	with itself and mate mapped_passed	read2_failed	with mate mapped to a different chr_failed	properly paired_passed	paired in sequencing_passed	singletons_failed	secondary_failed	singletons_failed_pct
Ctrl_INPUT1.cat.trim	33643503	0	1225825	0	0	17266188	0	17266188	56958	0	84.29	1147016	0	3.32	nan	94.09	0	0	0	35758201	0	35758201	41580	nan	0	31270662	0	0	29107898	34532376	0	0	nan
Ctrl_INPUT2.cat.trim	128250918	0	6267114	0	0	65279228	0	65279228	224960	0	87.41	3952276	0	3.03	nan	93.73	0	0	0	136825570	0	136825570	174780	nan	0	118031528	0	0	114127226	130558456	0	0	nan
GR-365_Ctrl_D1.cat.trim	59821142	0	2526589	0	0	30945983	0	30945983	122412	0	81.68	2330763	0	3.77	nan	92.86	0	0	0	64418555	0	64418555	85099	nan	0	54963790	0	0	50556176	61891966	0	0	nan
GR-365_Ctrl_D2.cat.trim	43962512	0	1809500	0	0	22579996	0	22579996	79134	0	83.63	1514438	0	3.35	nan	93.6	0	0	0	46969492	0	46969492	56343	nan	0	40638574	0	0	37768562	45159992	0	0	nan
GR-365_Ctrl_T1.cat.trim	44018799	0	1906734	0	0	22688639	0	22688639	99092	0	79.78	1648535	0	3.63	nan	93.09	0	0	0	47284012	0	47284012	66342	nan	0	40463530	0	0	36200066	45377278	0	0	nan
GR-365_Ctrl_T2.cat.trim	32677753	0	1375194	0	0	16814840	0	16814840	67816	0	82.0	1150475	0	3.42	nan	93.35	0	0	0	35004874	0	35004874	47268	nan	0	30152084	0	0	27576348	33629680	0	0	nan
GR-365_Ctrl_TD1.cat.trim	30796766	0	1185963	0	0	15930746	0	15930746	72734	0	76.31	1219889	0	3.83	nan	93.19	0	0	0	33047455	0	33047455	48050	nan	0	28390914	0	0	24312532	31861492	0	0	nan
GR-365_Ctrl_TD2.cat.trim	36320542	0	1347001	0	0	18829017	0	18829017	84030	0	76.72	1487937	0	3.95	nan	93.12	0	0	0	39005035	0	39005035	56376	nan	0	33485604	0	0	28891066	37658034	0	0	nan
GR-365_Ctrl_V1.cat.trim	49136524	0	2515440	0	0	24991093	0	24991093	106480	0	84.96	1469466	0	2.94	nan	93.6	0	0	0	52497626	0	52497626	77874	nan	0	45151618	0	0	42465430	49982186	0	0	nan
GR-365_Ctrl_V2.cat.trim	24522420	0	880361	0	0	12700263	0	12700263	53134	0	77.6	978869	0	3.85	nan	93.31	0	0	0	26280887	0	26280887	35401	nan	0	22663190	0	0	19710746	25400526	0	0	nan
GR-365_shGR_D1.cat.trim	51870745	0	1999385	0	0	26832578	0	26832578	116066	0	78.54	2053542	0	3.83	nan	93.18	0	0	0	55664541	0	55664541	80148	nan	0	47817818	0	0	42146410	53665156	0	0	nan
GR-365_shGR_D2.cat.trim	29283043	0	1059520	0	0	15307754	0	15307754	58148	0	78.44	1298481	0	4.24	nan	92.45	0	0	0	31675028	0	31675028	41148	nan	0	26925042	0	0	24013428	30615508	0	0	nan
GR-365_shGR_T1.cat.trim	33680887	0	1315406	0	0	17325500	0	17325500	61884	0	82.11	1169917	0	3.38	nan	93.65	0	0	0	35966406	0	35966406	42344	nan	0	31195564	0	0	28452676	34651000	0	0	nan
GR-365_shGR_T2.cat.trim	50918971	0	2058467	0	0	26234734	0	26234734	107130	0	81.58	1849966	0	3.53	nan	93.38	0	0	0	54527935	0	54527935	76364	nan	0	47010538	0	0	42803068	52469468	0	0	nan
GR-365_shGR_TD1.cat.trim	46335039	0	2024837	0	0	23886642	0	23886642	102638	0	81.96	1711672	0	3.58	nan	93.05	0	0	0	49798121	0	49798121	73105	nan	0	42598530	0	0	39153382	47773284	0	0	nan
GR-365_shGR_TD2.cat.trim	47857855	0	2163082	0	0	24755768	0	24755768	109652	0	81.67	1865919	0	3.77	nan	92.61	0	0	0	51674618	0	51674618	78447	nan	0	43828854	0	0	40438218	49511536	0	0	nan
GR-365_shGR_V1.cat.trim	31670006	0	1240507	0	0	16344743	0	16344743	67358	0	80.17	1196685	0	3.66	nan	93.34	0	0	0	33929993	0	33929993	47248	nan	0	29232814	0	0	26208202	32689486	0	0	nan
GR-365_shGR_V2.cat.trim	36505920	0	1408167	0	0	18886060	0	18886060	79774	0	79.02	1399483	0	3.71	nan	93.17	0	0	0	39180287	0	39180287	55325	nan	0	33698270	0	0	29846634	37772120	0	0	nan
GR-IA1_Ctrl_D1.cat.trim	24328678	0	772733	0	0	12685728	0	12685728	42366	0	73.52	1068297	0	4.21	nan	93.06	0	0	0	26144189	0	26144189	27352	nan	0	22487648	0	0	18653700	25371456	0	0	nan
GR-IA1_Ctrl_D2.cat.trim	17602179	0	548783	0	0	9209185	0	9209185	32624	0	74.0	785046	0	4.26	nan	92.8	0	0	0	18967153	0	18967153	21962	nan	0	16268350	0	0	13630120	18418370	0	0	nan
GR-IA1_Ctrl_T1.cat.trim	95757350	0	3523528	0	0	49442586	0	49442586	167360	0	82.53	3623734	0	3.66	nan	93.51	0	0	0	102408700	0	102408700	119635	nan	0	88610088	0	0	81613186	98885172	0	0	nan
GR-IA1_Ctrl_T2.cat.trim	52315767	0	2006425	0	0	27060844	0	27060844	94084	0	82.65	2022002	0	3.74	nan	93.21	0	0	0	56128113	0	56128113	67907	nan	0	48287340	0	0	44728870	54121688	0	0	nan
GR-IA1_Ctrl_TD1.cat.trim	48986953	0	1625227	0	0	25424947	0	25424947	98012	0	76.01	2004838	0	3.94	nan	93.35	0	0	0	52475121	0	52475121	64178	nan	0	45356888	0	0	38650676	50849894	0	0	nan
GR-IA1_Ctrl_TD2.cat.trim	20200055	0	649360	0	0	10577757	0	10577757	44366	0	72.89	969413	0	4.58	nan	92.64	0	0	0	21804874	0	21804874	29223	nan	0	18581282	0	0	15419648	21155514	0	0	nan
GR-IA1_Ctrl_V1.cat.trim	85358982	0	2750804	0	0	44454300	0	44454300	170692	0	75.85	3721924	0	4.19	nan	93.13	0	0	0	91659404	0	91659404	115846	nan	0	78886254	0	0	67436440	88908600	0	0	nan
GR-IA1_Ctrl_V2.cat.trim	112013002	0	3962708	0	0	57964859	0	57964859	221076	0	79.35	4443804	0	3.83	nan	93.43	0	0	0	119892426	0	119892426	154137	nan	0	103606490	0	0	91992882	115929718	0	0	nan
GR-IA1_shGR_D1.cat.trim	52592172	0	1673791	0	0	27479995	0	27479995	105346	0	75.21	2443197	0	4.45	nan	92.86	0	0	0	56633781	0	56633781	72176	nan	0	48475184	0	0	41337514	54959990	0	0	nan
GR-IA1_shGR_D2.cat.trim	45884504	0	1518530	0	0	23772631	0	23772631	91982	0	76.42	1840996	0	3.87	nan	93.52	0	0	0	49063792	0	49063792	60883	nan	0	42524978	0	0	36334154	47545262	0	0	nan
GR-IA1_shGR_T1.cat.trim	25311562	0	758243	0	0	13183499	0	13183499	48714	0	73.89	1113959	0	4.22	nan	93.31	0	0	0	27125241	0	27125241	31282	nan	0	23439360	0	0	19482020	26366998	0	0	nan
GR-IA1_shGR_T2.cat.trim	48519656	0	1637350	0	0	25176835	0	25176835	91274	0	78.85	1986220	0	3.94	nan	93.32	0	0	0	51991020	0	51991020	63103	nan	0	44896086	0	0	39703910	50353670	0	0	nan
GR-IA1_shGR_TD1.cat.trim	42589028	0	1467305	0	0	22147184	0	22147184	95024	0	75.78	1829621	0	4.13	nan	93.07	0	0	0	45761673	0	45761673	63991	nan	0	39292102	0	0	33564748	44294368	0	0	nan
GR-IA1_shGR_TD2.cat.trim	50253728	0	1794115	0	0	25968236	0	25968236	107408	0	79.21	1968179	0	3.79	nan	93.53	0	0	0	53730587	0	53730587	74619	nan	0	46491434	0	0	41140498	51936472	0	0	nan
GR-IA1_shGR_V1.cat.trim	53107705	0	1772808	0	0	27363328	0	27363328	98232	0	79.03	1950049	0	3.56	nan	94.0	0	0	0	56499464	0	56499464	65266	nan	0	49384848	0	0	43253182	54726656	0	0	nan
GR-IA1_shGR_V2.cat.trim	24411056	0	795283	0	0	12733398	0	12733398	46662	0	76.21	1095557	0	4.3	nan	92.95	0	0	0	26262079	0	26262079	31986	nan	0	22520216	0	0	19408230	25466796	0	0	nan
shGR_INPUT1.cat.trim	98035686	0	4230876	0	0	50001276	0	50001276	166092	0	86.3	3037216	0	3.04	nan	94.05	0	0	0	104233428	0	104233428	122528	nan	0	90767594	0	0	86301768	100002552	0	0	nan
shGR_INPUT2.cat.trim	79566025	0	3593788	0	0	40642131	0	40642131	150782	0	86.8	2552841	0	3.14	nan	93.74	0	0	0	84878050	0	84878050	118174	nan	0	73419396	0	0	70553270	81284262	0	0	nan
